Protein Info for Echvi_2435 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Putative silver efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1264 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 391 to 408 (18 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details amino acids 466 to 486 (21 residues), see Phobius details amino acids 502 to 524 (23 residues), see Phobius details amino acids 544 to 571 (28 residues), see Phobius details amino acids 583 to 602 (20 residues), see Phobius details amino acids 609 to 634 (26 residues), see Phobius details amino acids 647 to 673 (27 residues), see Phobius details amino acids 1062 to 1080 (19 residues), see Phobius details amino acids 1087 to 1108 (22 residues), see Phobius details amino acids 1136 to 1160 (25 residues), see Phobius details amino acids 1189 to 1208 (20 residues), see Phobius details amino acids 1218 to 1240 (23 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 529 (524 residues), 318.2 bits, see alignment E=5.2e-99 amino acids 817 to 1112 (296 residues), 158.9 bits, see alignment E=7.2e-51 amino acids 1130 to 1241 (112 residues), 83.6 bits, see alignment E=3.8e-28

Best Hits

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZF5 at UniProt or InterPro

Protein Sequence (1264 amino acids)

>Echvi_2435 Putative silver efflux pump (Echinicola vietnamensis KMM 6221, DSM 17526)
MLNAVIKFFLENKLVTVLLLVVLVAWGLVVVPFQWNTPFLPSDPVPVDAIPDLGENQQIV
FTEWMGQSPQDIEDQVTYPLTTSLLGLPGVKAIRSTSMFGLSSIYIIFDDDIDYYWSRSR
ILEKLNSLPSNLLPANVQPKLGPDATALGQVYWYTLEGRDRNGNPAGGWDLHELRSIQDY
YVRYGLAGVSGVAEVASVGGMEKEYHVDLDPDAMKVHGVSMMDVQQALKSTNQAIGASTM
EINKVEYYVRALGFVENIQEIAETVVKSTNNVPLRIKDIARVTIGPADRTMKGILDKSGA
EAVGGVVIARYGDNPMEVITNVKAKIAAISAGLPEKELSDGRMSKVTIVPFYDRSNLIME
TLATLNDAIVLQILMTIIVVMVMVYNLRASLLISAILPLAVLTCFIFMKYTGVDANIVAL
SGIAIAIGTMVDLGIILNENILRHMEEAPTGQALIKIVYKATKEVATAILTAVATTIVSF
LPVFTLQAAEGKLFGPLAYTKTFALISALLFTLLVMPAFAHWVFGIKEKGGFWKKWGNVA
LTGVGAFGLFWLPLAGIVLMAIGVNNLLLFYYKDTYQKYHSPVLIMIAVVAVSWLLATAW
APLGANVALFTNFLFVLLVVGIILGLFSLFIRYYEQMLSWCLAHKGTFLLLPAMMIFLGL
NSWIGFAGLFGWVADGVDRLGWNIRTTKVYSSMVHAFPGMGEEFMPALDEGAFLLMPTSM
PHSGVEANKKILQQLDMLVSSIPEITSVVGKAGRAETSLDPAPMSMFENIILYKPEFRVD
ENGRKIRFAVDEEGTFLKDEQGQLIPDEHGAYYRQWRDHIKSPDDIWDEIAKASKLPGVT
SAPKLQPIETRLLMLQTGMRAPIGLKVYGPDLETIAEFSTELEQYLKEVSGVKPAAVFAD
RSLGKPYLEIDLDRKAIARYGLQVKNVQETISAAMGGMKMTTTVEGRERYAIRARYARDF
RQSPEAIEQVLISTSSGIQVPLGEMASIQYRQGPIMIRSEDSFLVGYVLLDKQPNVAEVT
VVENAQKYLQGKIDSGELKVPKGVSYRFSGSYENQVRAEKRLSIVIPLCLILIFLILYFQ
FRSVPITLFIFSAISMAFAGAFIMLWLYGQPWFMDVEVLGSSMRTLFQMKTYNLSVAVWV
GFIALFGIATDDGVVMATYLKQRFEVNRTKTVPEIRQAVKEAGMRRIRPCLMTSATTLLA
LLPVLTSSGRGSDIMIPMAIPSFGGMAVALVSLFIVPVLYSWWEERKIVTNGDLQSKNPK
QQRI