Protein Info for Echvi_2418 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Mannosyl oligosaccharide glucosidase.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 890 PF03200: Glyco_hydro_63" amino acids 695 to 778 (84 residues), 27.6 bits, see alignment E=6.5e-11

Best Hits

KEGG orthology group: None (inferred from 59% identity to dfe:Dfer_4938)

Predicted SEED Role

"Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1D9 at UniProt or InterPro

Protein Sequence (890 amino acids)

>Echvi_2418 Mannosyl oligosaccharide glucosidase. (Echinicola vietnamensis KMM 6221, DSM 17526)
MNIERTRLKEDTDRKKHWKKWGPYLTERQWGTVREDYSPDGAAWENVTHDDAKSKAYRWG
EEGIGGFSDNKQKLCMAWAFWNGKDPMIKERLFGLTGNQGNHGEDVKELYYYLDATPTHS
YMKMLYKYPQQEFPYQDLVDENAKRGKHDPEYELIDTGIFDDDAYFDIFIEYAKEDYEDI
VAKATIHNRGKEEATIWVMPTIWFRKTWFTGHEPFLPKLSKSTSNRILAFNPKLGNYHFH
FDGEPELLFCDNETNRKKLYDIDNQKTFLKDAINDYVVAGDTAHLNPKHFGTKAAALYKI
TVPAGGCHTVAFRMAHKNAAVDTNDSDNIIEKRLKETNEFYHDLQGHVTDEELRSIQRQA
YAGMMWGKQFYYYNVERWLEGDPGRYMPPPERKKGRNHNWRHLQNYDIISMPDKWEYPWY
AAWDLAFHCIPLARLDAEFAKEQLLLLLSEWYMHPNGQIPAYEWNFNDVNPPIHAYAVHR
VYQMDKKMNGGKGDQEFLERAMHKLMLNFTWWVNQKDSDGQNIFEGGFLGLDNVSLFDRS
HVDKFGGRLEQADATSWMAMFSLNLLRISLDLCEFNKVYQYTATKFLEHFLYIAGAMNNI
SGENISLWDDEDNFFYDVLHIDDTAPKRMKVRSIVGIIPLFAVEPIKEEMYENLTEFKKR
LDFFLKEKPKLASLVSNWIEPGKDKRHLFSLLRGHRMKSLLKKLLDPDEFLSDYGIRSVS
KYHKDHPYSMKLNGEKHTVEYTPGESNTRMFGGNSNWRGPIWFPINWLIMEALKKFNYYY
GGDFPIEYPTGSGRFATLDIIAKELSLRNIEIFMRNKEGKRPVFGDNEKMQNDPHFKDYF
LFYEYFHGDNGKGLGASHQTGWTGLVAEMIHKYYPREEKIIDEAVTLFRS