Protein Info for Echvi_2415 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1040 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 44 to 114 (71 residues), 54.7 bits, see alignment 1.6e-18 PF13715: CarbopepD_reg_2" amino acids 44 to 126 (83 residues), 82.7 bits, see alignment E=2.4e-27 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 44 to 1040 (997 residues), 781.6 bits, see alignment E=1.6e-238 PF07715: Plug" amino acids 134 to 239 (106 residues), 64.4 bits, see alignment E=1.9e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 215 to 245 (31 residues), 53.8 bits, see alignment (E = 1.3e-18)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZD9 at UniProt or InterPro

Protein Sequence (1040 amino acids)

>Echvi_2415 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MAQNVPRKPLPKWLVEMTIPSMRWGLVFLLGIGLSISSFAQEVITGTVIDSGEGEPIPGA
SVLLKGTTTGTTTDFDGNFSISVPDGEAILVFSFIGYEKQEITVGNRSKIDVELVSSLTD
LESVVVVGYGTMKKSDVTGAIAGVDSDLITERGTTSPVQSLQGSVAGVQVSNSTGRLGDG
FNMTIRGNNSLAGSEPLYVVDGVVTNNIDFLNPNDIAKIEVLKDASSAAIYGSRAAGGVV
IVETKGGTDIPDATTFSFDTFYGVKTPARLPEMMSLEQWRDYHMSAYLGTTNNGEGMTPQ
EYEDVVLGPNNPVLAERFNNLDGFDWYDAVLRNGMQTNNHLTISHRSGASTYNIGIGYQK
ETGTLEQESLDKYTFNMNINQHINDKFMAGANMALSHGTNQRGSGNAMQEAFRLNPFLSP
WAIDENGDEIVGDLFPQPGKLTYPNGDWAANKTSTYNPLLEIANSSDETRSLRGVGNAYL
QYDPLDWLSLKSTFSIGFNNNRRGRFWGAMTNTGINNGNLPSSEVSYYNNMNTTWDNQLN
ISKAFNDHSFNFLALQSIFVDRTERANMSSTQQPFETEFYNVGSGLQETYNLGNGFSKSQ
LASFALRLNYSYLDKYLVTVSNRWDGSSLLSEGNKWQAFPSVALGWRLNKEAFLANSSTV
SDLKLRLGYGTVGNNNVSPYRTVNALTSQTYYDFNGTAANGWVQNSIANKALTWEKTKEI
NAGVDFGFLMNRITGSVDYYNRLSDNLLVTQKLPLEIGFSDIASNAASVRNKGVEVMLNT
INVENSHVTWSTTFTFTKNTNSIESLYGQSEVDDVGNGWFIGESIDAHYNFIYDGVWQAG
EDAAAFNQTEGQAKAKDVNNDGMINPNDDRVILGSSNPSWTGGIISNLQVGNFDMNFSLA
TQQGVLAYSDFHSNFTNVTDRGRQKLAIPNWYVPENSVGVPARVTNEYPQPRNEGQYWGT
GMAYYKDASFVKINNIGVGYTLPETLLSRANLKKVRVYVNVLNPFTFTDYDGWDPEWAQA
SLGIGRVSTITTQFGLSVKF