Protein Info for Echvi_2235 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Putative threonine efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 60 (22 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 182 to 205 (24 residues), see Phobius details PF01810: LysE" amino acids 14 to 203 (190 residues), 98.1 bits, see alignment E=2.3e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0W7 at UniProt or InterPro

Protein Sequence (210 amino acids)

>Echvi_2235 Putative threonine efflux protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MGFSLVEGIGMGLVLCLIIGPVFFALIQNSIEYGFRHSVVMALGILVSDSIYVVISHFGV
SYLTHNPSFKAGLGYVGGAIMIGFGLASFFKKTFNRPNSGGVLAKDPPRRMKGFLKGLSL
NGVNPFVLLFWISIAGMVQLKKRYSEGDRLLFYGGMLLTVFSTDLLKAYIAKRLSKFITP
IFMLYMNRAVGVILVVFGIRLLWYAVSKSW