Protein Info for Echvi_2190 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 993 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 147 to 165 (19 residues), see Phobius details amino acids 177 to 208 (32 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 257 to 281 (25 residues), see Phobius details amino acids 288 to 311 (24 residues), see Phobius details amino acids 477 to 494 (18 residues), see Phobius details amino acids 501 to 519 (19 residues), see Phobius details amino acids 531 to 555 (25 residues), see Phobius details amino acids 562 to 582 (21 residues), see Phobius details PF11028: TMEM260-like" amino acids 35 to 214 (180 residues), 244.4 bits, see alignment E=3.5e-77

Best Hits

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0R0 at UniProt or InterPro

Protein Sequence (993 amino acids)

>Echvi_2190 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family (Echinicola vietnamensis KMM 6221, DSM 17526)
MINYRKVNNLTGWILFLIATLVYLLTIEETASFWDPGEFIAVAYKLQVPHPPGAPFFLLI
YRMFSFFALGDPLEIAYWMNAGSALFSGFTILFLFWSITLLGRKLFRLEKGKESKGHTIA
IMGAGIIGALVYTFSDSFWFSAVESEVYAMSSFFTAIVIWAFLKWDVIENPKDENRYMIF
IAYLVGLSIGVHLLNLVTLPALALVVYFKKYQNPNLKGAIVAFLLGGVALVAINNIIIPG
LPSLAGSMEIFFVNSIGLPFGSGIIVFVGLFLGGLIAAIIYSIKQEKVILNTVLLSLTFI
LIGYGSYALIVVRSNANPPINENAPKDIISFVSYLKREQYGYRPLMHGQYFTAEVTEQKE
GDPVYAKGDDKYEIVDYEIVTEYDSEKTTILPRIYSTQPQHKRLYRQKLGLREGEEPTFG
DNIAFMLDHQLGHMYWRYFLWNFSGRESDITDAPWMGITNAFEDYPDYIENNKAHNNYLM
LPLILGLIGFLFQAKYDTKSFWLTTMLFLMMGVVLVLYLNSPPVEPRERDYIYVGSFYAF
AIWIGMGVLAIAHGLAKLNKNFAVAAILATLIAFPVPVIMASQNYDDHDRSDRYFSVDSA
RNFLASCEENAILFTGGDNDTFPLWYVQEVEGFRTDVRVIVLSYFDTDWYVEQMTRPINK
SAALPFSLEKKNFKRGTNDILFVNDRQGLEMISAKEYLRLLKNESDLLKVKSGYTNTIYQ
VPSRNLILEVDSAEVINKGVVPKGMEDLTVNHMNLRVKGNYLTKGNLMLIDLITTNNWER
PIYFNNTSLSTISLDLSNHVVMEGLTYRLLPVQKPENVDEFVNTDLAYKNVTENFAYRGM
SNPDNYFDEEYRRFTSNHRSMFNSLTNALIMEDKLDKAADIQKLSMEKFPNEAIPYDLSS
GQSVPSLFELGEDDMALDIIEVLSNRAFEMLQFYQEKGRAMDREAMYSLEMMRFFVPLLQ
ERGYDELATEIQNNLDKVIGPAASPRGVLQNRK