Protein Info for Echvi_2170 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1160 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 136 to 1160 (1025 residues), 851.2 bits, see alignment E=1.4e-259 PF13715: CarbopepD_reg_2" amino acids 137 to 217 (81 residues), 69.8 bits, see alignment 2.5e-23 PF13620: CarboxypepD_reg" amino acids 137 to 205 (69 residues), 43 bits, see alignment 7.3e-15 PF07715: Plug" amino acids 225 to 324 (100 residues), 67.1 bits, see alignment E=2.9e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 301 to 330 (30 residues), 60.1 bits, see alignment (E = 1.4e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G083 at UniProt or InterPro

Protein Sequence (1160 amino acids)

>Echvi_2170 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRKLLSLIKMVSKNLLYGIIIQCLLLSSLMAEESNAQIKPLDKAFVKMSHQPRTVRSLF
DEMESKTAYVFVYPDDLLQDTPSVTLERGKKSVEEVLIEIGKATNLKFKQVNNSVYVGKN
IQNRTDAVEIAISEIELKGVVTDETGNPLPGVAIVEKGTTNGTVTDLDGNYSINVQEGSA
LVISYVGYKSQTVQVGSSTQLDVILEEDLGDLEEVVVVGYGTQKKSTLTGSVTDLKADKL
AKNPTTNVKGLLVGQVPGLVTNQNPGLPGADNVDISIRGFGSPLVIVDGVESHLDRLDPN
DIESISVLKDASAAIYGARAGNGVILVTTKRGEAGKPKVSYHGYFATQKRLTFPEQVDAG
SFIQLGRDGIFNTQYDPANPDAEIPYGTTFTEENLEKYNAPGAPSYDWANATVKEGGSPL
QNHNLSFRGGSENVRYYLSVGMQDQSGIFKGDYDYQKLSVTSNTDINLSEGLDLKLNISH
INEQQDYASSSIGDVWNDLRTAQPIYPTSLPDPTKNPYSGFNARSPVTRIKKDVVGYENT
NKKTTAGAAELSYNLPFFKDLTVGARMNFRFRTAVRERLTKFYEVYSYNPDQVTDDFDGY
KLEGSQGINAYYKSIYGPSDPRSRFLYRGYARYNKDVSKHNFSALAFIEREDNVYNSLNV
TRRDLLSPDIPQVSGANELTITGGTGRDIEYTRISVAGRFNYSYDEKYLFEATLRADASS
KFGPKVRWGYFPSISAGWNIAREEFLKESSVLDQLKLRLSYSQTGVDKNLSNTSFEYLSG
FEERVGNIYILNGDQVAQIQSSGLPNELVTWEETTLYNAGLDYTLFDGRVFGSLDGFYRY
RDGLLRTPLEDLPGTFGAPLPAVNLDARSNRGFDASLGVRGTAGDFRYNIVAGVGYTREK
YEKYQEDIDESDPVQVKFNKRTGRWVNIVFGYKSDGLFNSQAEVDEYLDTYTFEDLNGSP
KPGDIRYVDITGDGVINREDRYEIGYGNDPQLTYSLQPSLTYKNFNLSMLWQGGSQFNVF
IVGTFRAPFGNEQVPLKLHEQYSWTQDPANPGVGANPEAQLPAFNRDGARTWNDAQSDFW
MKDGTYMRLKTATLSYTFDQRILSRIGLDRLSVYVSGDNLVTFNKLGIFKGNIDPEEASR
PNAFNLPLLRTMSFGVQVTL