Protein Info for Echvi_2155 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 TIGR00229: PAS domain S-box protein" amino acids 213 to 327 (115 residues), 37.2 bits, see alignment E=1.4e-13 PF08448: PAS_4" amino acids 222 to 323 (102 residues), 23.6 bits, see alignment E=1e-08 PF13426: PAS_9" amino acids 239 to 322 (84 residues), 29.4 bits, see alignment E=1.6e-10 PF00512: HisKA" amino acids 343 to 416 (74 residues), 46.8 bits, see alignment E=4.9e-16 PF02518: HATPase_c" amino acids 460 to 567 (108 residues), 91.7 bits, see alignment E=8.7e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G065 at UniProt or InterPro

Protein Sequence (568 amino acids)

>Echvi_2155 PAS domain S-box (Echinicola vietnamensis KMM 6221, DSM 17526)
MLRASYSIDNNNQKTPSQVVFPATDGLQNLCCKEKGGSMEKVSTELFKIQRLYHTGELTA
NKAFDRVNSIVSDLVSFEAILFGRLHADKVDRFIYFCSGTNDRSDLEYWNDVKNATNKLL
CKNVDALNSGLMVSGKSTFGKMTEDVAEAKKYLMIPTLMDNESLGFLALVNVEEVHLEKC
EGPLRELTVAFALIYLFELRMAGSGATVNGKSKNELLDMLVKHSSDMIGVFDVNWMPKYL
SPSFEQAFGFTRNQLMDPSFFEGFRSKVKDMEKVVVDGVKRYRFTNLNSAGERIWLESIF
DTLYDEDGEIQGHMAIMRNISEEVIGEQKMSEALEKEIALNKMKSQFISITSHEFKTPLS
TIKSSIEICNIELQRQLQEHPSEQKFKKHFNRVNNEVDRMNSLLVNLLNLEKINQGVIQV
SSKGKKINSYLRSVLEDWVDQDSVHFETTLPEDFIHSIDVSLMNQVITNLVENALKYGNR
DEKVIVKAHHTDRELVVSVRDFGDGIPEKEQEHLFKPFFRASNSSKYDKGSGLGLMITKK
FIELQNGTVHFESEEGVGTCFFLTFPLT