Protein Info for Echvi_2020 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: DNA-directed DNA polymerase III (polc)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1428 PF00929: RNase_T" amino acids 3 to 182 (180 residues), 46.5 bits, see alignment E=1.9e-15 TIGR00594: DNA polymerase III, alpha subunit" amino acids 245 to 1301 (1057 residues), 1197.8 bits, see alignment E=0 PF02811: PHP" amino acids 247 to 415 (169 residues), 164.6 bits, see alignment E=7.5e-52 PF07733: DNA_pol3_alpha" amino acids 556 to 830 (275 residues), 312.2 bits, see alignment E=1e-96 PF17657: DNA_pol3_finger" amino acids 833 to 996 (164 residues), 202.2 bits, see alignment E=1.1e-63 PF14579: HHH_6" amino acids 1069 to 1159 (91 residues), 102.8 bits, see alignment 2.9e-33

Best Hits

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYZ7 at UniProt or InterPro

Protein Sequence (1428 amino acids)

>Echvi_2020 DNA-directed DNA polymerase III (polc) (Echinicola vietnamensis KMM 6221, DSM 17526)
MYIIFDTETTGLPRNYNAPVTDLDNWPRLVQLAWQLHDERGKLISNQNYIVKPEGFTIPY
NAEKVHGISTDRALKEGHDLKKVLEIFHKDVEKAQYLVGHNIGFDINVCGAEFLRVDLPM
QLLEKKELDTKDISTDFCAIPGGKGGKYKWPTLTELHQKLFGVGFEDAHDAAYDVDATAK
CFFGLITAKVQPPEDGIAVEEVIYEPPKLDAANFAAAKDQQKQAAQDIIKQARRADISDL
VDTPFSHLHVHTQYSILQATSEIPAMVARAKEFNMPAIAMTDHGNMMAAFHFVKAAMDND
IKPVVGCEFNICRDHQNKSQKDDGFQAVLLAKNKTGYHNLAKLASFAYTQGFYYVPRIDK
ELLVQYKGDIIATTGGLWGEVPFLILNVGETQAEEAFVWWKEQFGEDFYVELNRHGIPEE
EKVNEVLLRFAQKYDVKYFAANNTYYNTKNDAKAHDILLCVKDGEKVDKPKRYIGKKGRE
FRYGFPNEEFYIKTPEEMKKLFADLPEAIECTNEIIEKVEPYKLAREVLLPKFNIPEQFQ
DPQDDEDGGKRGENAYLRHLTYEGAKRRYPEITEEIRERLDFELSIIANTGYPGYFLIVQ
DFTTAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPVAYDLLFERFLNPDRVSLPDIDID
FDDHGRQKVIDYVIEKYGANQVAQIITYGTMAAKSAIRDTARALDLPLSDADRLAKLVPD
IKLKALFGLANDRGKLAEKLKNNSENIDKAYELINISKGNDDLSKTINQAKILEGSVRNT
GIHACGVIITPDDITNFVPVALAKDSDMYCTQFDNSVVENAGLLKMDFLGLKTLTLIKDA
VRIVKERHGIELDPENFPIDDKETYELFQRGETVGIFQYESPGMQKYMRELKPTVFADLI
AMNALYRPGPLEYIPSFIKRKHGLEPIAYDLDDMEEYLQETYGITVYQEQVMLLSQKLAG
FTKGEADVLRKAMGKKLRDVLDKMKPKFVNQAAEKGHDKAKLEKIWKDWEAFASYAFNKS
HSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMNDITQVTFFMEECKRMGIEVLGPDVNES
KDGFTVNQEGQIRFGLAAIKGAGGAAVHSVIEERAENGPYKSIFDFTQRVNLRSVNKKTL
ESLAMAGGFDCFPDHHRRQYLEAPENDATLIEKAVKYAQKKAQEAESSQVSLFGGGSGME
VPMPSITPIEPFSQLQQLNIEKEVVGLYISGHPLDQFKVEFDSFTNTPLSEFANTEALKT
KGEIKAAGVVTSFAHRTTKNGNPFGTLTLEDYNGGHTFFLFGEDYIKYKEYFMTGWFLYV
TGSVQGKRWNPDELEFKVGNIMLLNEVRGKMVKGLRLNISLDDLTLDLMERLEAITSKYK
GEAKLYINVTDVKERIAVDLRSTKFLIDPSQDMIKALEDIPEVQYKIL