Protein Info for Echvi_1939 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Bacteroides conjugative transposon TraN protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR03780: Bacteroides conjugative transposon TraN protein" amino acids 25 to 274 (250 residues), 190.4 bits, see alignment E=1.9e-60 PF13595: DUF4138" amino acids 32 to 274 (243 residues), 188.1 bits, see alignment E=9.1e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYS5 at UniProt or InterPro

Protein Sequence (280 amino acids)

>Echvi_1939 Bacteroides conjugative transposon TraN protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKLYVSLVFSCLVGLAFGQVRPEAVLTPYPVEVGWDQTTVLIFPAKIKSADRGNGNVLA
QKDAYAANVLKLKAGKRGFSESNLHVVTEDGKIYPFTVHYNPKPDKLTIDIGKQQQMEAA
VAVLENTDIGREQLDRLSGKVFQEKGFLYRSDKNGKVKLRLKGIYSHREVLFFLFELKNR
SRIACPIQQWRFVIQDRKQVKRTAERQVNLTPLHMQYEKPKGIEGKGENRLVVAFSQFTI
ADAKKMVIRLFEENGDRNPVLSVKGKHLLKARPIINPQNQ