Protein Info for Echvi_1699 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycosyl hydrolases family 2, sugar binding domain./F5/8 type C domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1149 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF17132: Glyco_hydro_106" amino acids 41 to 690 (650 residues), 464.5 bits, see alignment E=1.6e-142 amino acids 745 to 936 (192 residues), 95.6 bits, see alignment E=5.8e-31 PF00754: F5_F8_type_C" amino acids 205 to 302 (98 residues), 28.9 bits, see alignment E=2.3e-10 PF22666: Glyco_hydro_2_N2" amino acids 1034 to 1104 (71 residues), 35 bits, see alignment 3e-12

Best Hits

KEGG orthology group: None (inferred from 57% identity to fjo:Fjoh_4101)

Predicted SEED Role

"glycoside hydrolase family 2, sugar binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVP1 at UniProt or InterPro

Protein Sequence (1149 amino acids)

>Echvi_1699 Glycosyl hydrolases family 2, sugar binding domain./F5/8 type C domain. (Echinicola vietnamensis KMM 6221, DSM 17526)
MSSIKTQHIICLLLFTLLAVSCGGSAEEGKDATDDFKPTYETSQPWVYWYWMYSTYSKEG
ITADLEAMKEAGIGGAFLMSIKGPATPPLTPQPTLQGSEAWWEMVHHAMKEADRLGLRLA
MHACDGFAVAGGPWITPEKSMQKVVWTDTLIQGGAKVDVQLNQPESYEDYYRELAVFAFP
VKAEWQQSSETLRPRVTNSFGDQSLEYLLDDADDQRFGTNDEAWIQYAFEKPFTCRSIRI
KTSGNSYQAHRLKIAVSDDGEHFREVTRLTPPRHGWQDWDYDYTHSIPATTAKYFRFIYD
KSGTEPGAEDLDAAKWKPSLKVKTIALSSRPTINQYEGKSGAVWRVSERADKEVLPSSEC
VPLDQLVDVSDQMDANGRLVWDAPDGEWKVMRFGYTSTGHTNYTGGGAKGLEVDKFNAEA
VKFQFDQWFGEALRTAGPELAEKVLKIFHIDSWEAGSQNWSPVFREEFKKRRGYDMVSYL
PVMAGVPLESAETSERLLYDLRRTISEVVMDNFFGTLQAEATKNDVKFSSENVAPTMVSD
GMEHFKYIDYPSGEFWLNSPTHDKPNDMRDAISGGHIYGKQIIQAEAYTELRMDWDEYPG
MLKALGDRNYALGINRFFYHVFVHNPWLDRKPGMTLDVIGLYFQRDQTWWKPGKAMVDYH
QRVQYQLQKGHPVIDLAVFTGEDLPSRSVLPERLVPFLPGPAGKEKMAAEKARWANEDQP
TRVIPKGVKHSANMADAADWTDPLRGYHYDSFNKDAFLTLAKVEDGKVVFGKGTSYSFLV
FPGQRKMNPNARLMSVEVAEKLLQLVKEGATVLVGEEPRGTLGYQEDESRLAAVVQELWA
GEQNASQQGGHPKTWQVGKGKVVQLPYQQATFEGIGLAPDVVAVDQNGKRNAGFAFAHRR
SGTEDVYFLSNQQEETRRWDISFRVSGKRPVFYDAVLDREYPVSKWKEVDGRTVLPVQLP
ANGSLFVIFREDTAEKAVNEGDNWPTYSEVQPVSSPWEVAFDPDYRGPHAVLEMTTLEDW
SSHANDSIKYYSGTAVYKTSFDWNKKDEGVFWLHLGEVANIASVKVNGKDCGIAWTFPYQ
VDISDALRNGQNELEIAVTNTWANRIIGDLKLPEAQRFTNTIADLERMEGREPLEAGLLG
PVRILEQNK