Protein Info for Echvi_1664 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Alpha-L-arabinofuranosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02018: CBM_4_9" amino acids 63 to 195 (133 residues), 26.4 bits, see alignment E=1.2e-09 PF22848: ASD1_dom" amino acids 230 to 453 (224 residues), 188.1 bits, see alignment E=2.5e-59 PF06964: Alpha-L-AF_C" amino acids 461 to 649 (189 residues), 114.1 bits, see alignment E=1.3e-36

Best Hits

KEGG orthology group: None (inferred from 49% identity to bvu:BVU_1001)

Predicted SEED Role

"Alpha-N-arabinofuranosidase (EC 3.2.1.55)" in subsystem L-Arabinose utilization (EC 3.2.1.55)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.55

Use Curated BLAST to search for 3.2.1.55

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVK5 at UniProt or InterPro

Protein Sequence (658 amino acids)

>Echvi_1664 Alpha-L-arabinofuranosidase (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKFRPLMLGVAMALLPFIAQAQDEPTALKVALNEKTADIAPTMWGLFFEDINFAADGGL
YAEMIKNYSFEFENPMMGWNRVEDHGAKGYVFNQNHEAAGVNHKYLRMQRLNEAGNFGLH
NQGFRGIAVKEGLKYTLTFLAKVAKGHNLTVTAKLLDEDQVIGEGSVSDFSDQWAEYEIV
MTAGQTLDGVNFQFLLEGEGELDVDMISMFPEDTWKGRKRGLRKDLVQLLADMNPGFLRF
PGGCIVEGFDLENRYQWKKTIGEMEDREVMKNRWNIEFAHRTTPDYYQSFGIGFFEYFQL
SEEIGAEPLPILSCGLACQFNTGEQVPIGALDQYVNDALDLIEFANGPVDSEWGSKRAEM
GHPEPFDLKFIGVGNENWGPQYIERAKIFEKAIKAAYPEITIVSTSGPFPDGREFEYLWG
ELKKMDAELVDEHYYRPPSWFRENARRYDDYDRNGPKVFAGEYAAHSTTVSEDFKRNNWE
AAMSEAAFMTGLERNADIVRLASYAPLFAHVDGWQWNPDLIWFDNLRSYGTTNYHVQKLF
STNPGTAVVPITAEGESLAGEDGLYASATIDETTNELIFKVVNIAPEAKKITIALDGKYK
GNGKGTWLEMADRDLEAYNSLDNPTAVSPKTKSFEVKKKTIELTLQGQSVNVGKVKIK