Protein Info for Echvi_1540 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type transport system, involved in lipoprotein release, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 274 to 300 (27 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details PF12704: MacB_PCD" amino acids 27 to 247 (221 residues), 35.6 bits, see alignment E=1.2e-12 PF02687: FtsX" amino acids 278 to 402 (125 residues), 59.7 bits, see alignment E=2.8e-20

Best Hits

KEGG orthology group: K09808, lipoprotein-releasing system permease protein (inferred from 50% identity to mtt:Ftrac_2607)

Predicted SEED Role

"Lipoprotein releasing system transmembrane protein LolC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYT1 at UniProt or InterPro

Protein Sequence (407 amino acids)

>Echvi_1540 ABC-type transport system, involved in lipoprotein release, permease component (Echinicola vietnamensis KMM 6221, DSM 17526)
MNLSFFIASRYFKSKKKRNFINILSRIAMIGVAVGTMALVIVLSVFNGLEDLIRGLYASF
DAPLKVELVKGKSFEVGDDFLDSLKAVEGVVSITEVIEDNALLKYGEDQMVVTMKGVSEE
FLDKERFEQGYFAGDMTLGSPDQPKAIMGRGVSFMLGVDPKNEFEQLRMFYPKAPRAGTI
DPRQMYNSGRLGLAGTFSVEKKFDDSFVVVPLTFARDLMDYGDKRTALEIKVAPSASLSS
VKAAMRDLLGEGFSVKDTDEQHAGLLRAIRIEKLFVFITLTFILAVASFNIFFSLSMLAI
EKKKDIAVMIAMGATQKLIRSIYIKQGAIIAFSGAIVGLVLGFAICWLQDRYGLVSLGVA
SSVVDSYPVKMIWTDFLWTSLSLIVITFFAAYRPATIAAKVNTVEHL