Protein Info for Echvi_1393 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02321: OEP" amino acids 29 to 223 (195 residues), 47.1 bits, see alignment E=1.2e-16 amino acids 267 to 426 (160 residues), 42 bits, see alignment E=4.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FY31 at UniProt or InterPro

Protein Sequence (454 amino acids)

>Echvi_1393 Outer membrane protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MFKITLPVVLITLVWTNVHSQTQLPIKKLLETATKNYPGILAAEAKKEASGEMVKSTRRT
LIPDINASAQANYSTYNNLTGMFYPEYILPVSGPPSTENLNDMVWGSAAGLLMKWEPYTF
GRRGNKVKAAESSYQASSALNKLTLLEHQVRLSGTYLDYLLADQILDVLESDRQRAKVNY
EQAVSLATSGLVSGVDTARFHTELSKANIKILQQQNTLLEYEAILSELIAADLPENLADS
TFFKVLPRLSGSTEMTHPREQLAMADWETSQYLFKAEKLSWMPTLSVLGTAYGRGSGVEL
DNNGNTFVDNPTDGFHLNRFNYGIGIQLAMPLTQISRYQARWKVKELEAEADKQELEKVR
LALNKQKSVADNTLITALAIAGETPVQFQDARYAYEAIQSQYQAGLITFTELIEARNELV
AAEIELRKSYWEAWKALLYIAAVNGDLEIFFNQL