Protein Info for Echvi_1370 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: PGAP1-like protein.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1718 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 674 to 695 (22 residues), see Phobius details amino acids 709 to 734 (26 residues), see Phobius details PF07819: PGAP1" amino acids 429 to 505 (77 residues), 24.8 bits, see alignment (E = 1.7e-09) PF13229: Beta_helix" amino acids 1136 to 1258 (123 residues), 28.6 bits, see alignment 1e-10 amino acids 1137 to 1295 (159 residues), 28.1 bits, see alignment E=1.5e-10 TIGR04183: Por secretion system C-terminal sorting domain" amino acids 1646 to 1716 (71 residues), 31.9 bits, see alignment (E = 5e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUR8 at UniProt or InterPro

Protein Sequence (1718 amino acids)

>Echvi_1370 PGAP1-like protein. (Echinicola vietnamensis KMM 6221, DSM 17526)
MRRKITTFLAVLCFVTAQAQQPGLDSLKALYDDLLPYASSGILIDRNPEWILATQSNYDP
RLHEGNATDSCNPLIFKDLYRLFYHATGDRNRFSVHPDNYQDAIDSAIYGQKMDFTDFEQ
VINTVPQADFVLGLMHFEYDYITPMAYDSAYVVFDSTLNKFQLLTGDIAVYDTVFLDTAT
MSTHPDSIIIADTSYYNDPSITQGRSFHKKTLVAGSLLRDNEVCLESLSEPVKIYIDPRF
FIVNNPNYTYHIDFADGNGWQQVTVGQVVNITYGSYGPKYIKFQIRNLSGNPMYEGHMMG
AFIKVNHCLLGSPDGKIINPETNHCQVPMSEGKGKLVGFMKYSYGGSGKLHKPIILVEGL
ETSSYVQGYPEYDKGNYWGFGDLNWTSVSSGNFGSVAPQLSKLPIFGDSLLSEGYDLIYV
DFHSNRSVIQKNANALISLIQAVNDSLTANGSPENIVVIGASMGGLISRTAVRKMELHDC
CHNIRLHGTFSSPHRGANIPLGVQHFLYEMGTTYNIAGKGDDAKDSYDHVVNSPAARQML
IYHRESGAQPEHENFMEYLDSIGHPQHCRNIALTNGSGMGIGQRQDNNNLSSYGLQPKDL
LLSVAIKLTVPVVVPDVTVVAFSLANMAFGGSTSQGNFTLMNAKAYAVDDSPTAVSNSEV
FEGGVSTWDNILHLIAHVVLYATGMIVIIKILIAHGIVKAQNAISMACMLCPLIHASEIL
AVYITSGIYSGLLLYSQDLNQDANHHNMAKEYATVATLPYDNAPGDFNITQQTIADLSGG
LVKADFPHHNFISTVSALDIDTNDLFVNVRDAIIVNPDITPFEAVWYNQTELTPELIESY
NQRHVEITDEPDGGNIGWTLNMLRETEGPATKTGGALDELNTYFNYGLPYEEPVAPDGFI
VSTTVQANGNLRVNADNVVGFLSSGYPAPEQRSHFSITTVSSECGGSYVKVQNGGAFTLG
DNNYPSVSGKGNSTDVTFLENSVLEIENGGTLTIYDFSTLVIDEGAELIIHPGAVINLEG
QNSVLEIKGKLILKSNADFAPSGSGFVRFDQNMTTGTANQLIVCEGNNEMSFLGTGKSNK
RLEIASNTIFTSDLDYVQIENAKVELAVGAYLGVHPDFKSWHTLYTRLGNSWTHGGLRVY
GQPLMDIRYCDFKYGDDGLLAVLSTYGNPLDLAYCTFTDCGNGLKSQGKRVNIRHSTFDN
NTKGWLALDVDGTCETFKNDFQYNSTGIDFLGQQGSGLKLSHSTFYSNSNEGVNLQGTSA
WSFCCNYASNGTGMAIDESEVWMNNHSQNTFDNAQDVYLQSADGLNINYGYNTFEGTFYI
EGEFSSNAASSLYYDAQNDKYYLEVKNNLMPAAGTIVPVDITMDGDPVGLRDWGTPAAYP
TACEDMEIETPSTIPDELETEIIIPDEGGNRILNEALIYAVGFIESQNIENADDNLTAME
ILRTIMNHVKEVARYGSSEPNNIQLPLLTTQEQRVMDLAFDFYMLALSNAYRFEVLEPNR
AESEQPVPMEIDYIIDEAEFRLEYQAPDASDPYLMEFHYNLAQSHAFRIGEYYDYALNKL
IDAQQWAEGRELEIAEYWQCVYEAEADLILENIDAEQFLDMTMNCRLTAPAYKKSPSPHG
STGVDVGDIIYSEGDDKGEITLTLQPNPTRSLSTLSIQGSHPEMNIRVYSNTGALVHRGM
IEENQKEYLLNLDVKPGVYHVHISYRGKNEVIKWIIAK