Protein Info for Echvi_1240 in Echinicola vietnamensis KMM 6221, DSM 17526
Annotation: NADH dehydrogenase, FAD-containing subunit
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K03885, NADH dehydrogenase [EC: 1.6.99.3] (inferred from 51% identity to sli:Slin_3483)Predicted SEED Role
"NADH dehydrogenase (EC 1.6.99.3)" in subsystem Carboxysome or Respiratory dehydrogenases 1 (EC 1.6.99.3)
MetaCyc Pathways
- aerobic respiration I (cytochrome c) (3/4 steps found)
- aerobic respiration III (alternative oxidase pathway) (2/3 steps found)
- NADH to cytochrome bd oxidase electron transfer I (1/2 steps found)
- NADH to cytochrome bo oxidase electron transfer I (1/2 steps found)
- Fe(II) oxidation (2/6 steps found)
- NAD(P)/NADPH interconversion (2/6 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.6.99.3
Use Curated BLAST to search for 1.6.99.3
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0FXQ6 at UniProt or InterPro
Protein Sequence (446 amino acids)
>Echvi_1240 NADH dehydrogenase, FAD-containing subunit (Echinicola vietnamensis KMM 6221, DSM 17526) MEHDIVNKPIPNLPVSNRPKLVILGGGFAGLKLARKMIKSEYQVILLDKNNYHQFQPLFY QVATASLEPSAISFPLRRVFHHTPNVSFRMAEALEIDQEGKRLYTNVGYVDFDQLVLAMG ADTNYFGMQNIMEYGTPMKTVSEALYVRNRIISNYEKAINIEDVEQRKALMNVVIVGGGP TGVELAGAIAELRNNVFPKDYPELNFKNMRVVLAEAGPKLLAGMSQQSSEKAVVYLDKLG VEIMVNAAVEDYDGLTIKIKDHESLETKTLLWAAGVKPNHIKGLREDQMIRNGRLIVDQY NKLKDTEGIYVIGDLCVLTDDDYPKGHPQVAQVAIQQADNLAHNLKAVADNRSMKKFKYK DLGSMATVGRKLAVVDLPFIKFQGFTAWITWLFVHLMAIVGVKNRILIFMDWAWNYLSFD PALRLLIRPRYVKPKEQEELVEEKHD