Protein Info for Echvi_0994 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Exopolyphosphatase-related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 PF01368: DHH" amino acids 16 to 169 (154 residues), 87.3 bits, see alignment E=1.1e-28 PF02272: DHHA1" amino acids 248 to 329 (82 residues), 40.4 bits, see alignment E=3.4e-14

Best Hits

KEGG orthology group: K06881, (no description) (inferred from 58% identity to mtt:Ftrac_2530)

Predicted SEED Role

"FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type" in subsystem RNA processing and degradation, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FX84 at UniProt or InterPro

Protein Sequence (346 amino acids)

>Echvi_0994 Exopolyphosphatase-related proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MLDLESFKKLLSSPKKVVITTHHKPDADALGSSLGMSNYLKKKGHDVTVITPSDYPSFLY
WMKGNDDVVNFEKEDCQKEAIELINAADIIICLDFSCLSRINELGALVKKADAIKVNIDH
HQDPEDFADFRYWSTDAAATCELIYDLIVQMGETELIDKDIADCLYSGIMTDTGGFKHPN
TTKHVHMVTAELIGLGADNSKISRLIYDTNSVNRLKFIGFALTRRLVIHTDLHTAYFWIS
KRDLKKYDSQTGDTEGLVNYALSLDGIKIAAMFTERKDGVKISFRSIENVAVNKFAAKYF
DGGGHRNAAGGRSMDSLKDTIERFEKLIKENQDRLLNQLELVNEKH