Protein Info for Echvi_0938 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Protein of unknown function (DUF1572).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 PF07609: DUF1572" amino acids 12 to 156 (145 residues), 62.1 bits, see alignment E=1.1e-20 PF05163: DinB" amino acids 15 to 164 (150 residues), 31.9 bits, see alignment E=2.5e-11 PF12867: DinB_2" amino acids 18 to 144 (127 residues), 30.4 bits, see alignment E=9.8e-11 PF04978: MST" amino acids 18 to 146 (129 residues), 30.1 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 48% identity to kdi:Krodi_2562)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWT0 at UniProt or InterPro

Protein Sequence (171 amino acids)

>Echvi_0938 Protein of unknown function (DUF1572). (Echinicola vietnamensis KMM 6221, DSM 17526)
MENNKLVIETIKHAVFRLEENNAKIVSCLEWLSEDEVWEKPNEASNSMGNLVLHLCGNLT
QYLLSALGKRKDERDRDAEFSASKIMNKQALIEKLTATVGQCVDLLQSLDQNSLETKYTV
QGYHYSGVGNVIHAVEHFAYHTGQIAFWTKILRRKDLGFYAGMNLNKKNEG