Protein Info for Echvi_0902 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 81 to 104 (24 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 137 to 156 (20 residues), see Phobius details amino acids 163 to 180 (18 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details amino acids 263 to 284 (22 residues), see Phobius details amino acids 296 to 315 (20 residues), see Phobius details amino acids 321 to 341 (21 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details amino acids 409 to 429 (21 residues), see Phobius details PF02366: PMT" amino acids 16 to 239 (224 residues), 69.5 bits, see alignment E=3.3e-23 PF13231: PMT_2" amino acids 65 to 227 (163 residues), 58.7 bits, see alignment E=8.6e-20

Best Hits

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FX01 at UniProt or InterPro

Protein Sequence (530 amino acids)

>Echvi_0902 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family (Echinicola vietnamensis KMM 6221, DSM 17526)
MEKILDKKGIAGGVLLLIAFLLHFSNINGLSIYVLDEAKNATAAIEMLQQGEWIVPTFNG
EYRFDKPPLHYYFFMLSYQLFGINEFAARFFPALFGFLTIYFTYRFARKNLGFRAGLLTL
LVLTSCLHWYIQFHMAVPDPFLIFFMSMGLMTFYEWSLSGFRSTRLMLVTYVALGLAVLA
KGPVGVVLPCIALLVYGLTMQLLNGKRLRRIFHPVGLGVFFLIALPWYVLVATKTNGLWI
EEFIFKHNLNRFSAPMEGHGGGFWLTWLFVLGGMLPFAFFLFQSVWHTLKYRTNRVTTFA
LICAATIIVFFMFAGTKLPNYTVPAYPFLAMIIGNYLAALAKASKWKSLWVPGVAYGMLL
VLLPFGIYFGLSADPALLVPKSLLWWFLVPVLVVFPMYRALYRHQTAGFLVWFGGGFMLV
AVVFFWFAFPKIDQQNPVLQAKASQLAASELYYYKIYNPAFSFYLQRPLKNIQEEAVPQR
TMGYLITRKRHLEELDQMDIHYQKVFEGKDLFESPMTVVLRLLPDEQGKE