Protein Info for Echvi_0876 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type transport system involved in cytochrome c biogenesis, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1037 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 424 to 445 (22 residues), see Phobius details amino acids 457 to 473 (17 residues), see Phobius details amino acids 728 to 748 (21 residues), see Phobius details amino acids 758 to 782 (25 residues), see Phobius details amino acids 792 to 810 (19 residues), see Phobius details amino acids 817 to 836 (20 residues), see Phobius details amino acids 856 to 883 (28 residues), see Phobius details amino acids 901 to 923 (23 residues), see Phobius details amino acids 939 to 957 (19 residues), see Phobius details amino acids 965 to 988 (24 residues), see Phobius details amino acids 1004 to 1022 (19 residues), see Phobius details PF05140: ResB" amino acids 338 to 412 (75 residues), 39.4 bits, see alignment 3.5e-14 PF01578: Cytochrom_C_asm" amino acids 788 to 992 (205 residues), 111.6 bits, see alignment E=4.3e-36

Best Hits

KEGG orthology group: None (inferred from 59% identity to mtt:Ftrac_2738)

Predicted SEED Role

"Putative cytochrome C-type biogenesis protein" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTB7 at UniProt or InterPro

Protein Sequence (1037 amino acids)

>Echvi_0876 ABC-type transport system involved in cytochrome c biogenesis, permease component (Echinicola vietnamensis KMM 6221, DSM 17526)
MRLLKLLISSKFMLVLLISFALAMAVATFIENDFGTPAAWSLIYESWWFEMIMVLLAINF
LANIQRYQLFSRKKWPIGLFHVAFVIIILAAGITRYFSHAGTIHIREGQAQNTYYSQEKY
LQVRALKEGNSQRFFKPLKLTDKTFQATTVSLPFQDQLSVNITRYIPHAKPEFMPGEQDY
LDMAVTMGSGREDMILPIGKNLAMNDLQLATDEESASPIKIYKTDSTWMIASDVHLQVMQ
MSNQQLGVLHSGDVKPLKLRSLYQWENGAFVIKGIHENSQLTYEEVQDPKLAEQLPDAVL
MEVLDHDGQVIDRQYVSIVKLAPEWRRFRYQDTQYEYTYGPKAHTLPFSLYLKDFEMQRY
PGSQSPSSYASNLVVEDATSSFDYRIYMNNVLDHGGYRFYQASYDMDEQGTVLSINQDRL
GSTLTYVGYFLLGLGMFFTLFTYNSRFRQLNQHLKKIKAQTVLLGLMCLPALGQGQTMDQ
QAEWVVPEGQAEQYGMLVVQDLDGRMKPLNTLANEIVRKLSGKTTVSLEGSEVTLNPEQL
LLAVQMYPEMMGSLPLIKIDAEKGQMIYEWLGLSPTGKVSFLDFLDAEGQYKLQQQVEKV
HLLKPSERNEADNELLKVDERFNIFFGLLTGDFLKLFPNRLDENHTWFTRENYRQNFPEE
DMKFVQHITGIYLQGLQEGLETGQWDNATASLDYISLYQQKAGAPVYPSEDRIEAELLYN
KLSLGNRLFGIFWLLGLLMLVLAIWGTFREDKWLQRFWNIGMVLSALGMLVFTFHLGLRW
YIALHPPWSDGFEMLVFVGWGVLFFGLIFSRKSRFTVPLGLLFSGTLLFVAFLEWLNPEI
TNLMPVLHSYWLKIHVAIIVSSYAPLALAAVMALLTMILLLFTPKHPLVKWWKSLLELSI
VNELAITIGLFLLAIGTFLGGVWANESWGRYWAWDPKETWALISILVYACVLHLRLVPGL
KNFMVYQLASLWAFASIIMTSFGVNYYLSGLHSYAKGDPVPIPTWVYWCVAILLAISIGA
IYRYRKFPSDIKAYLRV