Protein Info for Echvi_0873 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF00246: Peptidase_M14" amino acids 63 to 171 (109 residues), 48.4 bits, see alignment E=5.4e-17

Best Hits

KEGG orthology group: None (inferred from 52% identity to shg:Sph21_3888)

Predicted SEED Role

"FIG00652775: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWL6 at UniProt or InterPro

Protein Sequence (497 amino acids)

>Echvi_0873 Predicted carboxypeptidase (Echinicola vietnamensis KMM 6221, DSM 17526)
MEQFDLKRLSIKLILGIGFTLGFLSCETPQESTKSLQVSVLKAAFEQYREPAITHRRFKH
ADLQPLIEKHSETFQVSTLGQSVEGRTIKQLAYGSGETKVLLWSQMHGDESTATMALFDL
FNFLEGSEDDYAPIRNAVKENLSLHFIPMVNPDGAARFTRRNAYGIDLNRDAIREVSPEA
KILKAAREEFAADFGFNLHDQQVYYNVEQTPKPATISVLAPAFNYKTEVNDVRAKAMQVI
VGMNRILQEVTPGQVGKYNDAFEPRAFGDNFQKWGTSTILIESGGYPGDPDKQYIRQLNF
MIILNALYEIATGDYTRFAVEDYFRIPDNDNMLMDVILKNVTIKNDKGNYQLDLGIKRRN
EETGNGTYAVRGTLDDVGDLSVYYGYQELDASGKTLSPGKVAEEALDSLSSLTPEKALAL
LRDGHLAVKVNHAPEDGLHDLPIVVLHQQDSIPHGITTGSAANFFLKSNDQLTHAIVNGY
LIDLQKPVIKGLKQRVW