Protein Info for Echvi_0835 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized iron-regulated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 187 to 211 (25 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 377 to 394 (18 residues), see Phobius details amino acids 400 to 423 (24 residues), see Phobius details PF03929: PepSY_TM" amino acids 7 to 359 (353 residues), 212.3 bits, see alignment E=7e-67

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVR7 at UniProt or InterPro

Protein Sequence (441 amino acids)

>Echvi_0835 Uncharacterized iron-regulated membrane protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MDNKLLWKIHNWVGLYVGVVIAFLSITGAAALFRPEVDRLLNPHLTKVAPQSEEASLTAA
VQHVIATHPDHELFEVELPKPYLDTWNIRLRPKDPDPMQPTFWEVFVNPHTGEILGERNY
FKSFGYFLRNIHVRLYEAQYGRQLVGLAGIALLVSTVTGLLIYGNFTKKQAFGKIRKKNL
RITQADLHKFVGISALAFNLVIAITGAWLGLQVYLMEGFGMKQPNGFVRSEKPFSAEEDT
CYPLDFEEILATTKREFPALDVRNIRPTTNGEGIVQVLGDVKGQAYERRSNKLYLDKRDF
STQRKYNISAQGFGDKLYYVQESFHFGDFGGLPLKLLYAVLALGSAFLSLSGFIIFLERT
KKKRAQQAKYIPLRPLLIRWGGGMVAFLVIVAVLSTNFGIAVPSLLVTTGIYGFFIYLVI
KAIWKRFAGARPFSGTSDSVV