Protein Info for Echvi_0800 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Cytochrome c biogenesis factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 842 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 102 to 119 (18 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 272 to 288 (17 residues), see Phobius details amino acids 298 to 318 (21 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details amino acids 374 to 392 (19 residues), see Phobius details amino acids 425 to 445 (21 residues), see Phobius details amino acids 456 to 475 (20 residues), see Phobius details amino acids 481 to 504 (24 residues), see Phobius details amino acids 512 to 534 (23 residues), see Phobius details amino acids 808 to 827 (20 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 101 to 318 (218 residues), 83.2 bits, see alignment E=2.1e-27 PF16327: CcmF_C" amino acids 351 to 542 (192 residues), 43.7 bits, see alignment E=2.1e-15

Best Hits

KEGG orthology group: K02198, cytochrome c-type biogenesis protein CcmF (inferred from 52% identity to sli:Slin_1442)

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmF" in subsystem Biogenesis of c-type cytochromes or Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWR7 at UniProt or InterPro

Protein Sequence (842 amino acids)

>Echvi_0800 Cytochrome c biogenesis factor (Echinicola vietnamensis KMM 6221, DSM 17526)
MINTFIGNLGHFMVILAFVSAIITAWSYYQYTIVPETEKASWRKFSRAFFYIHAVSAVSI
GVILFNIIYNHRFEYFYAYSHSSEALPVHYMISSFWEGQEGSFILWIFWDVLLGLFLIHT
NKSWEGPVMVVFSLVQAFLVSMILGVVIGDLKIGSSPFILLRDVANAPIFQMNPDFVPED
GTGLNPLLQNIWMVIHPPTLFLGYASTLVPFAYLMAGLWTGRYKEWIRPALPWTIFSASI
LGMGIIMGAYWAYVTLNFGGYWNWDPVENASYVPWLIIVASIHTMITFKKSSTALKTSIV
LVITQFILVLYATFLVRSGVLGDTSVHSFTDLGLSGQLLIYLFFFMFVAIFFSVRAWKHI
PSSDREASVYSREFWIFIGATTLGLMAFQVILPTSIPVYNAIIEAFGGISNVAPPADQVE
FYTKFQLWFGVVVALLTAVGQFFWWKKMDKAALKSALVTPYIISLLLAALIISVAQVWNI
TYMIIVMAGTFTIVANATILAKLLRKSTFKLAGGSLAHIGIGMMLIGIMFSSGYSDTVSI
NMSGLTYKRDWEDELNKENVLLWINQPLQMKDYEVIYRGRNKKLEGVPGYVSVNKLEMTG
EQNKAIALEDIEVDGKQYHKKGDEVDIVLEENSYFEIEYYQDQQLQFTLFPMSQPNPTMG
LISSPDSKHYLTKDLYTHISAINNYDEPEWGEDKVYEATPGEQFHLGDYVTTFEGGEVVE
SVEGVELKEGDVAVKANLVVQDHDKQIHLDPVFLIRGNQVGRIPVINHDLGIKVLVDNIS
PESNKFVFKVNSYQKDYVVMKALVKPYINVLWMGTIIMLMGFGVAIYRRYDEFVKMRDKG
LE