Protein Info for Echvi_0787 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1068 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 24 to 94 (71 residues), 42.5 bits, see alignment 1e-14 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 1068 (1045 residues), 629.1 bits, see alignment E=1.8e-192 PF13715: CarbopepD_reg_2" amino acids 25 to 107 (83 residues), 72.7 bits, see alignment 3.2e-24 PF07715: Plug" amino acids 116 to 241 (126 residues), 65.6 bits, see alignment E=8.3e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 217 to 247 (31 residues), 56.6 bits, see alignment (E = 1.6e-19)

Best Hits

KEGG orthology group: None (inferred from 51% identity to gfo:GFO_2846)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUU3 at UniProt or InterPro

Protein Sequence (1068 amino acids)

>Echvi_0787 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKSVQLALLLCMFLQYSFAQTTSVTGTVTSAESEEPVPGVSILVKGTSRGAVTDLDGKY
SLEVPAGGEVLIFSFIGMTTQEVPINNRTVIDVAMASDAEELSEVVVTALGIERSKNELP
YAAQSVDGEKLNETRDPNFINQLSGRVAGLNIKSSNNLGGSSNVVIRGSSSLTGNNQALF
VIDGVPVDNSITNTNNQATGRGGYDYGNAASDINPDDIASVNVLKGAAATALYGSRASNG
VVVITTKKGSKGFGVTVNAGVTFGKIDKSTYAKYQNEYGAGYGSSFYNADLEGFDPNIPF
YYYGDDASYGEAFDGRMVYDWKSVNPASEFYQQATPWQAARNTPVEFFESPVSTSTSILL
NGGTDKGYYKLGYTRNDQEGILPNSRMKKNIVNFSGSYDIVEKLTATASINFSMNEGLGR
YGTGYSGLNVNQSFRQWWPVNVDIKELESEYFATNGNATWNWSNETAQVPAYTDNPYWTR
YENYQNDERIRTLGYMALNYEVTDWMDVMGRISLDTYSEIQEERIAVGSLDPSNYSRFNR
NYKEFNYDLLMNFNKQINEDLDFKGLLGGNIRKTQINSIDASTNGGLVVPGLYSLSNSLN
PMSPPTEVESTLQVNGVFAGATFTYRDYLILDGTVRRDQASSLAPENNTYYYPSVSGGFI
FSEFLNNKEVFTFGKLRANYAEVSNTAAPQVLQDIYYKPTAFDDVPLFSMPSSKNNPDLL
PERTKSFEIGAEMTFMDAAYGFDVTYYDTRTVDQIIPVTTSTATGFSSRYVNAGELQNAG
WEISAFGTPIQNQDFSWTINVNWTKNKSKVLSLNGDNQNLELASLQGGVTLNAAVGQPYG
TIRGRDFVYDTETGQRMVDEDGRYMVTNESNRVIGDINPDWYGGINNSFTYKNISLAFLI
DVQKGGDVFSLDRWYGDATGIYPETAGLNDLGNPKRDPVTNDASSGGIILPGVDANGQPN
TTRLDISSFGELGYAPGTNPNSMYVYDASYVKLRNLSISYSFPRDLVDRIKGVQGIDLSL
IGRNLWIIHKNMKYSDPEESLGAGNNQGYQSGAYPTTKTYGFNLRLKF