Protein Info for Echvi_0652 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF03938: OmpH" amino acids 22 to 167 (146 residues), 108.1 bits, see alignment E=2.2e-35

Best Hits

KEGG orthology group: K06142, outer membrane protein (inferred from 47% identity to mtt:Ftrac_1773)

Predicted SEED Role

"Outer membrane protein H precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FW84 at UniProt or InterPro

Protein Sequence (182 amino acids)

>Echvi_0652 Outer membrane protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MLKCLKIVFFLLMLASAAQAQKIGFVDSEYILNKHPDYKIVQEELKKQAAAWKKEAQNLE
NKIKEMYSALKAEEVLLTEDMYKERMEAIRQKEKAASNYNTRVFGINGEYYQKQDELMKP
LQSKIFDAIDRVSKRNGIAIMFDKAADLSMIYTDPVHDYSDFVIEELGIDESLETEEAKQ
DQ