Protein Info for Echvi_0621 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: gliding motility-associated protein GldM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details TIGR03517: gliding motility-associated protein GldM" amino acids 1 to 524 (524 residues), 353.4 bits, see alignment E=1.2e-109 PF12081: GldM_1st" amino acids 31 to 223 (193 residues), 157.4 bits, see alignment E=9.1e-50 PF21601: GldM_2nd" amino acids 229 to 330 (102 residues), 86 bits, see alignment E=4.3e-28 PF21602: GldM_3rd" amino acids 334 to 412 (79 residues), 73.2 bits, see alignment E=3.4e-24 PF12080: GldM_4th" amino acids 415 to 532 (118 residues), 76.6 bits, see alignment E=5e-25

Best Hits

Predicted SEED Role

"gliding motility-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FSJ6 at UniProt or InterPro

Protein Sequence (533 amino acids)

>Echvi_0621 gliding motility-associated protein GldM (Echinicola vietnamensis KMM 6221, DSM 17526)
MAGGKETPRQKMIGMMYLVLTALLALQVSNQILQKFILLNDGLERTSKNYIEKNASIVSN
IEGTVEQQGNNEKDLPKVEAAKQIREKTSEIFSYLEGLKQELITQSNAKNDEGQYKNSAL
KNTDIAGNIFNNNKKGYEMQERLNRYPEEIGALLSGVGIPLEFEKIAKDANEIDMFKNDP
DVRYKDFVNLNFVKSPIGAVLAIISQYQNEVLNIESESLGALTRSLGSFYYKADIFEPMV
SANSNIVAAGTKFEGNLFIASASSSAQPKMSVNGKEIPVENGFGKISFPVGPADSYDDRG
LAKRTLEGEVVVNIDGKDSLLNVNYEYFVANPTIEVTAEAIQQLYAQCANELSIKVPALG
NSYAPEFAVTNGQAIKGSNPGDVTIIPANSGKVNIGVSSGGAKIGTVTYDIRPVPAPTIA
AYNGDKEIDMSVPFPAPGPSQLKIKAVPEPTFGRTMPKDARFQVSGGVVKLLRNEVPREQ
VNINGEDVAIRQLLAAARSGDNLVIQVTEVTRTNFQGQKIKSNVNHIERIAIK