Protein Info for Echvi_0422 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1142 PF04851: ResIII" amino acids 362 to 526 (165 residues), 133.8 bits, see alignment E=1.7e-42 PF00270: DEAD" amino acids 364 to 530 (167 residues), 39.8 bits, see alignment E=1.2e-13 PF18766: SWI2_SNF2" amino acids 366 to 561 (196 residues), 62.3 bits, see alignment E=1.6e-20 PF00271: Helicase_C" amino acids 639 to 741 (103 residues), 29.7 bits, see alignment E=1.9e-10 PF08463: EcoEI_R_C" amino acids 990 to 1134 (145 residues), 95.1 bits, see alignment E=1.4e-30

Best Hits

Predicted SEED Role

"Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)" in subsystem Restriction-Modification System (EC 3.1.21.3)

Isozymes

Compare fitness of predicted isozymes for: 3.1.21.3

Use Curated BLAST to search for 3.1.21.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUK5 at UniProt or InterPro

Protein Sequence (1142 amino acids)

>Echvi_0422 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases (Echinicola vietnamensis KMM 6221, DSM 17526)
MSNFQFISTEFPEIANRAIKAEQFALTSPVESCFNARAALELGVNWMFENDADLEWPFDK
KLASLMHEPGFKEIFDSYGDLYRELHLIRRIGNNAVHNQRIKQEDSIHLLKCLFRFGVFL
MAAYGEEEVRVPDFNDSLIPTGDELKKSRKEIDLLREKLAQLEQENEKKRAELAEKEAAN
DLLRITHEKQHEQLKEQRKAREAEAIPKALPRPPSEAFTRKLYIDSALKDAGWTRLREGY
ELEFEVSGMPLSTNPSGVGFVDYVLWSDNGLPLAVVEAKKTTANSSKGRHQASLYADCLE
KKFKQRPLIYYTNGFDFYLWDDLFAPDRKVSGFMTKDQLELAIRRRKERKDLRDFKVNLA
ITGRPYQTEAIQRVAENLSVIKDGKIKQRHRKSLLIMATGSGKTRTSASIVDMMVKCNWA
KRILFLADRNALVTQAKNAFTEHLPDLTSIDLTKEKENDSTRLVFSTYPTMMNQIDQARD
GEGRFYGVGHFDLIIIDEAHRSVYQKYRAIFQYFDAFILGLTATPKKDVDHNTYELFEIE
DDNPTFAYELDQAVNDSFLVPPRAISVPLKFMREGIKYSELSEKEKLEYEEKFGDPSNEE
AEDGIDKSQLYKWLFNSNTVDQVLNHLMTSGIKVDGGDKIGKTIIFAKNHKHAVYIEERF
NKNYPEYSGKFCRVIDNQTEKAQDILERFVLDKEEKEPQIAISVDMMDTGVDAPRVVNLV
FFKPVRSVAKFWQMIGRGTRLRPNLFGPGQHKDSFLIFDYCENFEFFEVNPEESKGSLGL
SLTQQAFQLRLDLALALRESNSKEENEFAEELISLLHSQVAALNQERFVVRHHLEFAVKF
KQKDQWADLGPSKLQEIGTHIVPLILSEDDDDVSARRFDVLMLNFQLALKGGRMTSRYQN
KISGACKVLERKGNIPVVSAGMPMIKKVLGGFLQHANVVDLEDVRESLRELMQFLDAVDQ
PLVETHFQDYLDLTKIEEKSLVKEAPLEPYRRRVERYINDHKDHLVISKIKTNQPITEAE
LAQLQEIFFNADEVGSKEEFEKEGKGKPLGLFIRELVGLEKEAVQSAFAEFIQAQNLNAE
QIKFVDLIIGYLTQNGVIDKRALFESPFKDINDSGPFGLFDDAQVTKIISILDRINGGVD
VG