Protein Info for Echvi_0383 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Virulence protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF13310: Virulence_RhuM" amino acids 71 to 303 (233 residues), 364.9 bits, see alignment E=9.7e-114

Best Hits

KEGG orthology group: None (inferred from 66% identity to amt:Amet_3301)

Predicted SEED Role

"Putative DNA-binding protein in cluster with Type I restriction-modification system" in subsystem Restriction-Modification System

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTP8 at UniProt or InterPro

Protein Sequence (328 amino acids)

>Echvi_0383 Virulence protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MSSEILIYQTEDGQTKIQTRLENETVWLTQEQISDLFQRDRSVITKHIGNVFKEGELDEK
SNVQILHISGSDRPVKFYNLDVIISVGYRVKSHRGVQFRKWATSRIKEYIVKGFTMNDEL
LKEAGGGNYFDELLARIRDIRSSEKVFWRKVLDIYATSIDYDPNTEISTTFFKTVQNKMH
WAAHGNTAAEVIYKRIDAGKKNLGLTNFKGAKPTKKETEVAKNYLNEQELEILNRIVTAY
LEMAELQAMNRKPMYMKDWVSRLDDFLTMTGNEILTHAGKISHQKALGKAHSEYEKFKEK
TKNELSQVEKDFIENIDKTAKQLKNKKK