Protein Info for Echvi_0248 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ribosomal protein L16, bacterial/organelle

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 139 TIGR01164: ribosomal protein uL16" amino acids 2 to 127 (126 residues), 204 bits, see alignment E=3.5e-65 PF00252: Ribosomal_L16" amino acids 4 to 132 (129 residues), 189.6 bits, see alignment E=1e-60

Best Hits

Swiss-Prot: 82% identical to RL16_CYTH3: 50S ribosomal protein L16 (rplP) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K02878, large subunit ribosomal protein L16 (inferred from 84% identity to mtt:Ftrac_3039)

MetaCyc: 63% identical to 50S ribosomal subunit protein L16 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L16p (L10e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FU62 at UniProt or InterPro

Protein Sequence (139 amino acids)

>Echvi_0248 ribosomal protein L16, bacterial/organelle (Echinicola vietnamensis KMM 6221, DSM 17526)
MLQPRRTKYRKMQKGRIKGIAQRGHTLAFGNFGIKSLEAGWITSRQIEAARIAMTRAMKR
EGQVWIRIFPDKPITKKPAEVRMGKGKGAPEYWVAVIKPGTILFEATGVSQELAQEALRL
AQQKLPVSTKFVVRRDYVG