Protein Info for Echvi_0243 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Ribosomal protein L5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF00281: Ribosomal_L5" amino acids 27 to 82 (56 residues), 81 bits, see alignment E=6.1e-27 PF00673: Ribosomal_L5_C" amino acids 86 to 179 (94 residues), 138.1 bits, see alignment E=8.9e-45

Best Hits

Swiss-Prot: 68% identical to RL5_FLAPJ: 50S ribosomal protein L5 (rplE) from Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)

KEGG orthology group: K02931, large subunit ribosomal protein L5 (inferred from 79% identity to chu:CHU_3150)

MetaCyc: 55% identical to 50S ribosomal subunit protein L5 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L5p (L11e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FU57 at UniProt or InterPro

Protein Sequence (186 amino acids)

>Echvi_0243 Ribosomal protein L5 (Echinicola vietnamensis KMM 6221, DSM 17526)
MANPRVKDKYIKEIAPELKEKFQYKTVMQVPKLVKIVINKGIGAAVADKKLVDQGVEELS
LITGQRAVATKAKKSVSNFKLRDGMPIGAKVTLRGNRMYEFLDRLTTVALPRVRDFKGIS
DKGFDGRGNYTLGVEEQIIFPEISIERVNRISGMDVTFVTTAETDEESYALLKAFGMPFV
NNNKEE