Protein Info for Echvi_0236 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ribosomal protein L15, bacterial/organelle

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 TIGR01071: ribosomal protein uL15" amino acids 2 to 145 (144 residues), 166.6 bits, see alignment E=1.5e-53 PF00828: Ribosomal_L27A" amino acids 76 to 145 (70 residues), 78.1 bits, see alignment E=2.7e-26

Best Hits

Swiss-Prot: 67% identical to RL15_AMOA5: 50S ribosomal protein L15 (rplO) from Amoebophilus asiaticus (strain 5a2)

KEGG orthology group: K02876, large subunit ribosomal protein L15 (inferred from 71% identity to sli:Slin_5768)

Predicted SEED Role

"LSU ribosomal protein L15p (L27Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUW7 at UniProt or InterPro

Protein Sequence (148 amino acids)

>Echvi_0236 ribosomal protein L15, bacterial/organelle (Echinicola vietnamensis KMM 6221, DSM 17526)
MKLHTLQPAKGSVKNRKRIGRGQGSGRGGTSTRGHKGAQSRSGYSRKLGFEGGQMPLQRR
VPKFGFKNHNRVEYKPINLDVLQSLAEKLDTDSITFDVLVENGLVSKKDVVKVLGRGELT
SKLNVSAHYFSASASESIEKLGGTVNKI