Protein Info for Echvi_0235 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: preprotein translocase, SecY subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 71 to 95 (25 residues), see Phobius details amino acids 116 to 133 (18 residues), see Phobius details amino acids 140 to 165 (26 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 302 to 324 (23 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 389 to 407 (19 residues), see Phobius details TIGR00967: preprotein translocase, SecY subunit" amino acids 19 to 418 (400 residues), 378.9 bits, see alignment E=1.5e-117 PF00344: SecY" amino acids 70 to 407 (338 residues), 363 bits, see alignment E=7.3e-113

Best Hits

KEGG orthology group: K03076, preprotein translocase subunit SecY (inferred from 73% identity to mtt:Ftrac_3052)

Predicted SEED Role

"Preprotein translocase secY subunit (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FV58 at UniProt or InterPro

Protein Sequence (438 amino acids)

>Echvi_0235 preprotein translocase, SecY subunit (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKFISTVKNIFSIEDLRIRIVNTIGFLVVFRLGSYIVLPGVDPNQLEGSSEGIFGLIDT
FLGGAFSNASIFGLGIMPYISASIVLQLLTVGVPYFQKLQKEGESGRKRINQITRVLTIL
ITLAQGIGYIKATIPSDAILVSQVLFMFSSLILLTSGTMFCMWLGEKITEKGIGNGISML
IMIGIISNLPGAILGEVVSKGTSGALLLIIEFFVLFFVVVGVVALTEATRRIPVQYAKQV
VGGKVYGGQRQYIPIKVNASGVMPIIFAQSLMFVPALIAQIWSSESDIANYIGSTFSNPT
SWQYNLVFALMIILFTFFYTAITVNPEQIAEDMKRNGGFVPGVKPGAPTADFIDNIISRI
TLPGSVLLALVAIMPAFAMIAGVGNQFAQFYGGTSLLIMVGVIMDTLRQIESYLLMRHYE
GMMKSGNMKNNPSNYAVA