Protein Info for Echvi_0230 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: 30S ribosomal protein S11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 TIGR03632: ribosomal protein uS11" amino acids 14 to 129 (116 residues), 178.8 bits, see alignment E=2.1e-57 PF00411: Ribosomal_S11" amino acids 22 to 131 (110 residues), 152.4 bits, see alignment E=2.9e-49

Best Hits

Swiss-Prot: 78% identical to RS11_CYTH3: 30S ribosomal protein S11 (rpsK) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K02948, small subunit ribosomal protein S11 (inferred from 80% identity to mtt:Ftrac_3056)

MetaCyc: 56% identical to 30S ribosomal subunit protein S11 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S11p (S14e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FV53 at UniProt or InterPro

Protein Sequence (132 amino acids)

>Echvi_0230 30S ribosomal protein S11 (Echinicola vietnamensis KMM 6221, DSM 17526)
MAQRRNDKAKGKKRVVKVEAVGQAHIKASFNNIIISITNNSGQVISWASAGKMGFRGSKK
NTPYAAQMAAQNCGQVAYDLGLRKIEVFVKGPGSGRESAIRTLQNVGLDVTTIIDVTPLP
HNGCRPPKRRRV