Protein Info for Echvi_0189 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: translation elongation factor P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 TIGR00038: translation elongation factor P" amino acids 3 to 186 (184 residues), 236.8 bits, see alignment E=6.8e-75 PF08207: EFP_N" amino acids 3 to 60 (58 residues), 93.4 bits, see alignment E=9.8e-31 PF01132: EFP" amino acids 65 to 117 (53 residues), 65.4 bits, see alignment E=5e-22 PF09285: Elong-fact-P_C" amino acids 130 to 185 (56 residues), 89.6 bits, see alignment E=1.3e-29

Best Hits

Swiss-Prot: 67% identical to EFP_AMOA5: Elongation factor P (efp) from Amoebophilus asiaticus (strain 5a2)

KEGG orthology group: K02356, elongation factor P (inferred from 76% identity to mtt:Ftrac_3200)

Predicted SEED Role

"Translation elongation factor P" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUQ0 at UniProt or InterPro

Protein Sequence (187 amino acids)

>Echvi_0189 translation elongation factor P (Echinicola vietnamensis KMM 6221, DSM 17526)
MASTADFKNGLCMEMNNDIWSIVEFQHVKPGKGAAFVRTKLKSLTTGKVLDKTFNAGEKI
TTARVERRPHQFLYADDLGYHFMDTTTFEQIPIEEKLIERADLMKEGQVVDILIHDETDT
PLGVELPPFVELLITYTEPGIKGDTATNALKPATLETGATVMVPLFVDQDIVIKVDTRDG
SYSERVK