Protein Info for Echvi_0099 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 118 to 133 (16 residues), see Phobius details amino acids 141 to 158 (18 residues), see Phobius details amino acids 178 to 195 (18 residues), see Phobius details amino acids 202 to 222 (21 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 282 to 299 (18 residues), see Phobius details amino acids 305 to 322 (18 residues), see Phobius details amino acids 328 to 345 (18 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUF6 at UniProt or InterPro

Protein Sequence (394 amino acids)

>Echvi_0099 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKSGKIYSFTDVILAMALTMGGFMLFNIYQSPLQHSLNPLFDANQYEKAYAYFRGESTDY
PVNYPFSVRILVPWLAAQLPFENIIDNFKALNLCFGLAWIPLWFMVAKRIGIDRFKAWAG
WFWITFHWVGVLKGNLSDPITVDVPLYCFQLLLVYALWSQRWGLLLLITPLMTIQKESIL
PLLLALVAFPGISLWRNHQKKAFFFLVGAFLVSLLSLKLTGHLFPPANTGNNGAVNLFYN
TLGLLGHPDLFLHWICSITVAYGGFLWAFVRQQQLSSFYNQKWLAPLTLTYAFFSLFAGG
DFTRIAFLGSPFIMLFLLKELALTRRQWIILLCISLPAMRLGEFLPDGGAAFEKWKTWYP
EYAPWKWMVIYALYTVVVAAVSWKWLKKPKNLLD