Protein Info for Echvi_0096 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted pyrophosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 108 PF03819: MazG" amino acids 23 to 100 (78 residues), 53.8 bits, see alignment E=1.9e-18 PF01503: PRA-PH" amino acids 29 to 88 (60 residues), 26 bits, see alignment E=9.7e-10

Best Hits

Swiss-Prot: 43% identical to YPJD_BACSU: Uncharacterized protein YpjD (ypjD) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 82% identity to mtt:Ftrac_1026)

Predicted SEED Role

"FIG00649439: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTM4 at UniProt or InterPro

Protein Sequence (108 amino acids)

>Echvi_0096 Predicted pyrophosphatase (Echinicola vietnamensis KMM 6221, DSM 17526)
MTIEEAQAQVDDWIKTVGVRYFNELTNMAILTEEVGELARIMARKYGEQSFKESDKDKDL
GDEMADVLWVLMCLANQTGVDLTKALEKNFEKKNIRDKDRHRNNDKLK