Protein Info for Echvi_0073 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 TIGR00197: YjeF family N-terminal domain" amino acids 8 to 209 (202 residues), 134.9 bits, see alignment E=3e-43 PF03853: YjeF_N" amino acids 26 to 187 (162 residues), 131.5 bits, see alignment E=4.8e-42 TIGR00196: YjeF family C-terminal domain" amino acids 240 to 496 (257 residues), 198.9 bits, see alignment E=1.1e-62 PF01256: Carb_kinase" amino acids 248 to 495 (248 residues), 191.1 bits, see alignment E=3.5e-60

Best Hits

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUD5 at UniProt or InterPro

Protein Sequence (503 amino acids)

>Echvi_0073 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region (Echinicola vietnamensis KMM 6221, DSM 17526)
MLEIISGSSVKKLDTDFITEKGITSHRLMENAALAFCDWFEENYHRNDKVGIFCGPGNNG
GDGLAIARLLWRKGYDIIVFLVGDTEKASADCRLNRELLPDKLPAISMSSDDIAHMEFDL
NVVVDAMLGIGVNRPLAGDFLNMVVKLNDLSNVRKVAVDIPTGLPADECLQGEALKADVT
VSFQYPKFSLMFPEHAGYVGVLHVVGIGIGNKFMRQFTESKYYLQPSDISKRHLNFSRFA
HKGDFGRVLLVGGSYGSIGAVRMSAEAALRTGSGLATCFVPACGVDVIQASLPEVQVISS
SGEKRLCWDEGDMGVNRFDAVGIGPGMGGSAETVTFLESFLNVYKGPKVIDADAINILSN
HKKLLNYLDKDAILTPHIKEFERLVGHCENHKQRLGKALEFSSEHSCVLVLKGAHTSISF
PDGTQYFNSTGNKHMATGGAGDVLTGMITSFLGQGYGTKNAVLCGVFQHGLAGEIASEDK
KRGTIATDIIQAIPKSYLQLNVD