Protein Info for EX28DRAFT_4284 in Enterobacter asburiae PDN3

Annotation: ABC-type sugar transport systems, permease components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 167 to 190 (24 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 97 to 303 (207 residues), 63.9 bits, see alignment E=8.3e-22

Best Hits

Swiss-Prot: 96% identical to UGPA_SALTY: sn-glycerol-3-phosphate transport system permease protein UgpA (ugpA) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K05814, sn-glycerol 3-phosphate transport system permease protein (inferred from 99% identity to enc:ECL_04810)

MetaCyc: 92% identical to sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA (Escherichia coli K-12 substr. MG1655)
ABC-34-RXN [EC: 7.6.2.10]; 7.6.2.10 [EC: 7.6.2.10]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>EX28DRAFT_4284 ABC-type sugar transport systems, permease components (Enterobacter asburiae PDN3)
MRGEYLQSKPMSSSRPVFRSRWLPYLLVAPQLVITVIFFIWPAGEALWYSVQSVDPFGLS
SQFVGLDNFTALFHDSYYLDSFWTTMKFSALVTVSGLVASLFFAALVDYVVRGSRIYQTL
MLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAELGYDWNHAQNSGQAMFLVVFASVWKQI
SYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFRLSLPLIAPVSFFLLVVNLVYAFFDT
FPVIDAATAGGPVQATTTLIYKIYREGFAGLDLSASAAQSVVLMFLVIILTVVQFRYVES
KVRYQ