Protein Info for EX28DRAFT_3296 in Enterobacter asburiae PDN3

Annotation: TIGR02099 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1267 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 1208 to 1231 (24 residues), see Phobius details PF13116: YhdP" amino acids 1 to 1254 (1254 residues), 1306.4 bits, see alignment E=0 TIGR02099: TIGR02099 family protein" amino acids 2 to 1263 (1262 residues), 1515.8 bits, see alignment E=0

Best Hits

Swiss-Prot: 76% identical to YHDP_ECOLI: Uncharacterized protein YhdP (yhdP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 93% identity to enc:ECL_04628)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1267 amino acids)

>EX28DRAFT_3296 TIGR02099 family protein (Enterobacter asburiae PDN3)
MRRLPGILLLTGATLVVIVALLVSGLRLILPHLDSWRPQLLAKIESTTGVPVNVSQISAN
WQNFGPTLDVRDINASLKDGGYLKIKRVTLALDVWQSLLHLRWQFRDLTFYQLQFLTNTP
LSGGDSGQGLEANRFSDLFLRQFDHFDLRDSEVSFITLSGQRAELAIPQLTWLNGKERHR
AEGQVNLSSLNGQHGVMQVRMDLRDDDGLLNNGKVWLQADDVDVKPWLGDWIQQNMQLET
ARFSLEGWLTLTKGEFASGDIWLKQGGASWKGEKQQHQLSVDNLTAHVTQEKEGWQFAIP
DTRITMDGKPWPRGALTLAWMPEQDVGGTASKRSDELRIRASNLDLAAIEGLRSMAAKLS
PDLGEIWLATQPSGKIDALALDIPLQATEKTRFQATWKDLAWKQWKLLPGAEHFSGKLEG
SVENGRLTVDMHDAKMPYETVFRAPLEIEQGSAVLNWLRNYKGFQLDGRHIDVKAKAVHA
RGDFRYLQPEGDEPWLGILAGISTDDGSQAWRYFPENLMGKALVDYLSGAIQGGQADNAT
LVYGGNPHLFPYKHNEGQFQVLVPLHNATFAFQPGWPALKNLDIELNFLNDGLWMKSDSV
ALGGVTASNLTANIPDYSKEKLLIDADINGPGKAVGPYFEETPLKESLAATLQQLQLDGD
VNARLHLDIPLDGEMTTAKGDVRLKNNSLFIKPLESTLKNLSGQFSFENGNLKSEPLTAS
WFNQPVNIDFTTTEGEKAYQVAVNLDGNWQPSRMDLLPKPIESSVQGAVAWQGKVAIDLP
YHAGAQYKVDITGDLKNLQSQLPAPLDKQAGQPLPVKLNVDGNLNSFALIGSAGGTNHFN
SRWLLNRKLTLDKAIWTTDSRSTPPLPEQAGIELNLPPMDGAEWLALFQKGVGQNVDETA
QFPQTITVRTPSLMLGGQQWNNLSLVSQPGANGTKVEAQGREINGTLTMRNHAPWQAAIR
YLYYNPASAASGKDKPAEASPLSNVSRVDFSGWPDLQLRCAECWLWGQKYGRIDGDFTIQ
ANTLTLSGGLVDTGFGRMTAAGEWVNNPGEQRTSLKGDIKGNKLDAAANFFGISTPLRGS
SFDVNYDLHWRDAPWKPDEASLNGILKTHFGKGEIADVSTGRAGQILRLLSFDALLRKLR
FDFSDTFSEGFYYDSIRSTAWIKDGVLHTDDTLVDGLEADIAMKGSVNLVRRELDMEAVV
APEISASVGVAAAFVVNPIVGAAVFAASKVLGPLWSKVSILRYRITGPVDKPQINEVLRQ
PRKDAQQ