Protein Info for EX28DRAFT_3200 in Enterobacter asburiae PDN3

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 15 to 32 (18 residues), see Phobius details amino acids 71 to 94 (24 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details amino acids 289 to 313 (25 residues), see Phobius details amino acids 324 to 344 (21 residues), see Phobius details PF03773: ArsP_1" amino acids 75 to 343 (269 residues), 109.2 bits, see alignment E=1.2e-35

Best Hits

Swiss-Prot: 84% identical to YRAQ_ECOLI: UPF0718 protein YraQ (yraQ) from Escherichia coli (strain K12)

KEGG orthology group: K07089, (no description) (inferred from 89% identity to ent:Ent638_3588)

Predicted SEED Role

"FIG006303: protein yraQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>EX28DRAFT_3200 Predicted permeases (Enterobacter asburiae PDN3)
MTGQSSSQAATPVQWWKPALFFLVVIVGLWYVKWQPYYGKAFTAAETHSIGKSILAQADS
SPLQAAWDYAMVYFLAVWKAAVLGVILGSLIQVLIPRNWLVKTLGQPRFQGTLLGTIFSL
PGMMCSCCAAPVAAGMRRQRVSMGGALAFWMGNPLLNPATLVFMGFVLGWHFAFIRLVAG
LLTVLVVATLVQKLVKDTAAEPAAVELDVSEPQGGFFARWGRALWQLFWSTIPVYILAVL
ALGAARVWLFPHANGAIDNTLMWVIAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALA
LLITLPAISLPSLIMLRKSFPAKALWLTAGLVALSGVMVGSITLM