Protein Info for EX28DRAFT_2204 in Enterobacter asburiae PDN3

Annotation: Integral membrane protein, interacts with FtsH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 50 to 77 (28 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details PF01027: Bax1-I" amino acids 19 to 231 (213 residues), 210.2 bits, see alignment E=1.5e-66

Best Hits

Swiss-Prot: 83% identical to YBHL_ECOL6: Inner membrane protein YbhL (ybhL) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K06890, (no description) (inferred from 94% identity to ent:Ent638_1278)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>EX28DRAFT_2204 Integral membrane protein, interacts with FtsH (Enterobacter asburiae PDN3)
MDRFPRSDSIVQQTRSGLQTYMAQVYGWMTVGLLLTAFIAWYAANTPELMMFIFSSKITF
FGLIIAQLALVFVLSGLVQKLSAGMATTLFMLYSALTGLTLSSIFIVYTYSSIASTFVVT
GGMFGVMSLYGYTTKRDLSGLGSMLFMGLIGIVLASLVNLWLKSDALMWAVTYIGVVIFV
GLTAYDTQKLKNIGEQIDVRDSSNLRKYAILGALTLYLDFINLFLMLLRIFGNRR