Protein Info for EX28DRAFT_2121 in Enterobacter asburiae PDN3

Annotation: Fucose permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 14 to 32 (19 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 306 to 328 (23 residues), see Phobius details amino acids 340 to 360 (21 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details PF07690: MFS_1" amino acids 223 to 392 (170 residues), 67.2 bits, see alignment E=6.5e-23

Best Hits

Swiss-Prot: 85% identical to YBJJ_ECOLI: Inner membrane protein YbjJ (ybjJ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 92% identity to ent:Ent638_1336)

Predicted SEED Role

"Putative transport protein/putative regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>EX28DRAFT_2121 Fucose permease (Enterobacter asburiae PDN3)
MTLTSPRKALQRRLWALFMFFFIPGLLMASWATRTPAIRDILSVSTAEMGIVLFGLSIGS
MSGILCSAWLVKRFGTRAVIRTTMCFAVFGMGILSVALWFASPLLFALGLTVFGGSFGSA
EVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMALTATGVSANLHILLAALVCI
IPILTSIRAIPDGTGKNSADEQHSAEKGLPFYRDFQLMLIGVVVLAMAFAEGSANDWLPL
LMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFIDRYSRVAVVRASALLGGLGIAMIIF
VDVDWIAGVSVILWGLGASLGFPLTISAASDTGPDAPTRVSVVATTGYLAFLVGPPLLGF
LGEHYGLRSAMLVVLGLVIIAALVARAVAKPETNQTTLEKGYER