Protein Info for EX28DRAFT_2095 in Enterobacter asburiae PDN3

Annotation: Protein of unknown function (DUF2593)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 transmembrane" amino acids 18 to 40 (23 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details PF10767: YbjO_DH-like" amino acids 16 to 155 (140 residues), 214.9 bits, see alignment E=2.1e-68

Best Hits

Swiss-Prot: 83% identical to YBJO_ECOLI: Inner membrane protein YbjO (ybjO) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to enc:ECL_02815)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>EX28DRAFT_2095 Protein of unknown function (DUF2593) (Enterobacter asburiae PDN3)
MGLLKKSRTTHARPNVPALVQVAALAIIMIRCLDVLMILNTLGVRGIGEFIHRSVQTWNL
TLVFLSSLVLVFIEIYCAFSLVKGRNWARWVYLLTQITAASYLWAASLGYGYPELFSIAG
ESKREILRALFMQKLPDMLVLFLLFIPASSRRFFRLQ