Protein Info for EX28DRAFT_1625 in Enterobacter asburiae PDN3

Annotation: electron transport complex, RnfABCDGE type, C subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 TIGR01945: electron transport complex, RnfABCDGE type, C subunit" amino acids 13 to 445 (433 residues), 590.6 bits, see alignment E=7.4e-182 PF13375: RnfC_N" amino acids 14 to 115 (102 residues), 107.3 bits, see alignment E=1.9e-34 PF01512: Complex1_51K" amino acids 139 to 283 (145 residues), 161.8 bits, see alignment E=5.5e-51 PF10531: SLBB" amino acids 296 to 325 (30 residues), 29.9 bits, see alignment (E = 2e-10) PF13237: Fer4_10" amino acids 373 to 427 (55 residues), 33.6 bits, see alignment 1.5e-11 PF13183: Fer4_8" amino acids 376 to 430 (55 residues), 31 bits, see alignment 1.6e-10 PF13534: Fer4_17" amino acids 377 to 430 (54 residues), 24.4 bits, see alignment 1.8e-08 PF12838: Fer4_7" amino acids 377 to 430 (54 residues), 35.7 bits, see alignment 5e-12 PF00037: Fer4" amino acids 413 to 430 (18 residues), 21.8 bits, see alignment (E = 6.5e-08)

Best Hits

Swiss-Prot: 82% identical to RSXC_ECOK1: Ion-translocating oxidoreductase complex subunit C (rsxC) from Escherichia coli O1:K1 / APEC

KEGG orthology group: None (inferred from 80% identity to eae:EAE_17940)

Predicted SEED Role

"Electron transport complex protein RnfC" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (711 amino acids)

>EX28DRAFT_1625 electron transport complex, RnfABCDGE type, C subunit (Enterobacter asburiae PDN3)
MLKLFSAFRKEKIWDFDGGIHPPEMKTQSNGTPLRQIPLATRYVMPLKQHIGAEGELCVK
EGDTVLRGQPLTFGRGRMLPVHAPTSGKVVAIAPHTVAHPSALSELSVIIEADGEDRWIN
RDGWSDYRSQSREALIERIHQFGVAGLGGAGFPTGVKLRGGGDNIQTLIINAAECEPYIT
ADDRLMQDCATQVVEGIRILAHILKPREVLIGIEDNKPQAISMLRAVLAGSHDISLCVIP
TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPLTERVVTLT
GESVSRPGNVWARLGTPVRHLLEQAEFCPASDQMVIMGGPLMGFTLPWLDVPVVKITNCL
LAPSPTEMGEEQEEKGCIRCSACADACPADLLPQQLYWYSKGQLHDKAKSHNLADCIECG
ACAWVCPSNIPLVQYFRQEKAEIYAISMEEKRAAEAKARFEARQARLEREKIARQERHKQ
AAVQPAGKDQDAINAALARVREKKADAAQTVVIQAGEKPDNSEAIAAREARKAAARARQA
EKAQTVQADTEVDPRKAAVEAAIARAKARKSGEQSVVIEQDAVDPRKAAVEAAIARAKAR
KAAQQAPAAVSEAEAPPVDPRKAAVEAAIARAKARKPAQQAPTVVSEAEAPPVDPRKAAV
EAAIARAKARKAAQQEEQPQAANDDPRKAAVAAAIARVQAKKAAQQAVNED