Protein Info for EX28DRAFT_1034 in Enterobacter asburiae PDN3

Annotation: Uncharacterized protein conserved in bacteria, putative virulence factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 993 PF07520: SrfB" amino acids 1 to 990 (990 residues), 1352.4 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 97% identity to enc:ECL_01857)

Predicted SEED Role

"SrfB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (993 amino acids)

>EX28DRAFT_1034 Uncharacterized protein conserved in bacteria, putative virulence factor (Enterobacter asburiae PDN3)
MLVNLCDYKQSVTLIANSGVQFLDFGLTPQDTASNGRFVRKTANGPLLRLDFDLVNGRYT
VPGTNGGQPEVVKPETTIPLHQSLAVLDGVWLPVPFQRFNPPRTFVEGPDNWARVQVRRL
DTPDTAGNTHRVTLALDSQIAEHATSALSPVENDILNGTRFALAWRDNEVESFLDQTWID
GWLREAFTQYADGVENRSERDLQQAMRGFEYQAHWLNLMTMLGEQLTVPEVKFVTHTLST
PAIPVDLILDVGNTHTCGVIIEDHGDANDGLRQTAELQVRSLSEPQFLNAPLFTSRLEFS
EARFGKQHFSVESGREDAFVWPSIVRVGDEARKLAMQRLGTEGNSGISSPRRYLWDETPV
VQDWRFSQMNSKTQREPLATAFPLMNLMNDDGEPLFTLPQDERLPVFSPQYSRSTLMTHM
LCELLAQALGQINSVATRLRLGFPASPRQLRTLILTLPSAMPKQEREIFRRRMFEAIAIV
WKAMGWHPQDEDFVTRKQQDKSVVPVPEIQMEWDEASCGQLVWLYNEAISRFGGQTEAFF
ASLARPDRGPEPGSQPGRALRVASIDIGGGTTDMAITHYQLDDGSGNNVKITPQLLFREG
FKVAGDDTLLDVIQRYVLPALQTQLQKSGIADASLLMASLFGDSGRIDTQAVLRQQTALQ
LFMPIGHAILAAWESSDVDDPLAGLHATFGDLLPQKPTRNVMNYLQQAIDHALPAGSDAF
DLFAVPLHVNFREMQDAMLAGQFTLASPLHAVCEAISHYSCDILLITGRPGCLPGVQALI
RHLQPVPVNRIVWLDKYQVHEWYPFSQQGRIGNPKSTAAVGAMLCSLALDLRLPRFNFKA
ADIGAYSTVRYLGVLDNTVNTLREENVWYQDIDLDKPGAKLDARLHFPLRGNVTLGFRQL
ANARWPATPLYTLSINSAELAKAIAGDGVLNVRLKLCGGSKQEGPEAFELSDAWLQDGTP
VAPDALTFKLNTLADRRHSGSHYWIDSGSVYLK