Protein Info for EX28DRAFT_1020 in Enterobacter asburiae PDN3

Annotation: Heat shock protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03724: META" amino acids 28 to 139 (112 residues), 75.9 bits, see alignment E=1.2e-25

Best Hits

KEGG orthology group: K03668, heat shock protein HslJ (inferred from 93% identity to enc:ECL_01842)

Predicted SEED Role

"Heat shock protein hslJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>EX28DRAFT_1020 Heat shock protein (Enterobacter asburiae PDN3)
MKKLIALSVISLVLTGCVNPGKASVQPEQLKNHRFVLENVNGKAVKTATPQPEIGFSALP
DISLVNNISVSGQMCNRFNGQGKLSEGELKVKTLAMTRKLCTEPQLNELDQAIGDMLRKG
AQVDLTEDQLTLATADKTLMFKRVE