Protein Info for EX28DRAFT_0953 in Enterobacter asburiae PDN3

Annotation: Predicted N-acetylglucosaminyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF13176: TPR_7" amino acids 73 to 98 (26 residues), 18.4 bits, see alignment (E = 8.9e-07) PF14559: TPR_19" amino acids 192 to 245 (54 residues), 27.7 bits, see alignment 1.4e-09 PF13181: TPR_8" amino acids 215 to 245 (31 residues), 13.4 bits, see alignment (E = 3.7e-05) PF18073: Zn_ribbon_LapB" amino acids 355 to 382 (28 residues), 44.2 bits, see alignment (E = 6.1e-15)

Best Hits

Swiss-Prot: 90% identical to LAPB_ECOLI: Lipopolysaccharide assembly protein B (lapB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to enc:ECL_01747)

Predicted SEED Role

"Heat shock (predicted periplasmic) protein YciM, precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>EX28DRAFT_0953 Predicted N-acetylglucosaminyl transferase (Enterobacter asburiae PDN3)
MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYDQRLLAVQQLGRDYMAA
GLYDRAEDMFAQLVDETDFRIGALQQLLQIYQATSDWQKAIDTAERLVKLGKDKQRVEIA
HFYCELALQQMGNDDMDKAMALLKKGAAADRNSARISIMMGRVFMANGDYAKAVESLLRV
IDQDKELVSETLEMLQTCYQQLDKQEEWVAFLRRCVEENTGATAELMLSDVVEQYEGSDT
AQVYITRQLQRHPTMRVFHKLMDYHLNDAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGQ