Protein Info for ECD_10055 in Escherichia coli BL21

Annotation: outer host membrane

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF06316: Ail_Lom" amino acids 1 to 206 (206 residues), 182.1 bits, see alignment E=1.1e-57 PF13505: OMP_b-brl" amino acids 9 to 206 (198 residues), 64.4 bits, see alignment E=1.6e-21

Best Hits

Swiss-Prot: 100% identical to VLOM_LAMBD: Outer membrane protein lom (lom) from Escherichia phage lambda

KEGG orthology group: None (inferred from 100% identity to ebw:BWG_3740)

Predicted SEED Role

"Attachment invasion locus protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>ECD_10055 outer host membrane (Escherichia coli BL21)
MRNVCIAVAVFAALAVTVTPARAEGGHGTFTVGYFQVKPGTLPSLSGGDTGVSHLKGINV
KYRYELTDSVGVMASLGFAASKKSSTVMTGEDTFHYESLRGRYVSVMAGPVLQISKQVSA
YAMAGVAHSRWSGSTMDYRKTEITPGYMKETTTARDESAMRHTSVAWSAGIQINPAASVV
VDIAYEGSGSGDWRTDGFIVGVGYKF