Protein Info for ECD_03079 in Escherichia coli BL21

Annotation: DUF1016 family protein in the PD-(D/E)XK nuclease superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 transmembrane" amino acids 139 to 154 (16 residues), see Phobius details PF17761: DUF1016_N" amino acids 19 to 111 (93 residues), 89.4 bits, see alignment E=1.2e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to ebd:ECBD_0528)

Predicted SEED Role

"Putative uncharacterized protein YhcG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (159 amino acids)

>ECD_03079 DUF1016 family protein in the PD-(D/E)XK nuclease superfamily (Escherichia coli BL21)
MESLSERTSTGYQQIHDGIIHLVDSARTETVRSVNALMTATYWEIGRRIVEFEQGGEARA
AYGAQLIKRLSKDLSLRYKRGFSAKNLRQMRLFYLFFQHVEIRQTVSGELTPLGIPQTPS
AEFPSAKIWQTLSAKLRGCLIFPQLLYCISYFRFVYSCK