Protein Info for ECD_01388 in Escherichia coli BL21

Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF11769: DUF3313" amino acids 30 to 213 (184 residues), 203.6 bits, see alignment E=1.3e-64

Best Hits

Swiss-Prot: 100% identical to YDCL_ECO57: Uncharacterized lipoprotein YdcL (ydcL) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 100% identity to eco:b1431)

Predicted SEED Role

"Uncharacterized membrane lipoprotein clustered with tellurite resistance proteins TehA/TehB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>ECD_01388 lipoprotein (Escherichia coli BL21)
MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKETTSATGKPVLRWVDPSF
DQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMKEAIAQRKPLVTTAGPRSL
IFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTMDTRLYFEGELIDAATNKPVI
KVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFDVNKK