Protein Info for ECD_01225 in Escherichia coli BL21

Annotation: putative DGPF domain-containing enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 98 PF03795: YCII" amino acids 1 to 95 (95 residues), 114 bits, see alignment E=1.8e-37

Best Hits

Swiss-Prot: 100% identical to YCII_ECOL6: Protein YciI (yciI) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K09780, hypothetical protein (inferred from 100% identity to eco:b1251)

Predicted SEED Role

"YciL protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (98 amino acids)

>ECD_01225 putative DGPF domain-containing enzyme (Escherichia coli BL21)
MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMPAVDSNDPGAAGFTGST
VIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF